An improved binary particle swarm optimization algorithm for DNA encoding enhancement

Mohd Saufee, Muhammad and Krishna Veni, Selvan and Sharifah Masniah, Wan Masra (2011) An improved binary particle swarm optimization algorithm for DNA encoding enhancement. IEEE Symposium on Swarm Intelligence (SIS), 2011. ISSN ISBN: 978-1-61284-052-9

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Official URL: http://ieeexplore.ieee.org/document/5952579/

Abstract

The accuracy of DNA computing highly depends on the DNA strands used in solving complex computations. As such, many approaches are proposed to design DNA oligonucleotides that are stable and unique. In this paper, an improved binary particle swarm optimization (IBPSO) algorithm is proposed and implemented. Four objective functions which are H-measure, similarity, hairpin and continuity are employed to define the uniqueness of designed sequences. The DNA words are constrained within a predefined range of GC-content and melting temperature. The performances and the ability of the algorithm to enhance the characteristics of generated DNA code words are analyzed. The results obtained show that this algorithm executes better sequences and did perform better compared to other optimization techniques. Moreover, it converges faster than the previously suggested binary particle swarm optimization algorithm.

Item Type: Article
Uncontrolled Keywords: improved binary particle swarm optimization (IBPSO), DNA oligonucleotides, DNA computing, research, Universiti Malaysia Sarawak, unimas, university, universiti, Borneo, Malaysia, Sarawak, Kuching, Samarahan, ipta, education
Subjects: T Technology > TK Electrical engineering. Electronics Nuclear engineering
Divisions: Academic Faculties, Institutes and Centres > Faculty of Engineering
Depositing User: Karen Kornalius
Date Deposited: 14 Jun 2017 06:45
Last Modified: 14 Jun 2017 06:45
URI: http://ir.unimas.my/id/eprint/16643

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