No Access Published Online: 04 April 2018
AIP Conference Proceedings 1940, 020055 (2018); https://doi.org/10.1063/1.5027970
Mitochondrial DNA of Bornean Orang Utan populations suggests that there are three different subspecies (Pongo pygmaeus pygmaeus; Sarawak & Northwest Kalimantan, P. p. wurmbii; Southern West Kalimantan and Central Kalimantan, P. p. morio; East Kalimantan and Sabah). The subspecies of Orang Utans in captivity are difficult to determine through morphological observation. Thus, misidentification by ranger or zoo staffs leads to unwanted consequences especially towards conservation efforts of Orang Utan. The main objective of this study was to identify the subspecies and the geographic origin of 10 Orang Utans in Zoo Melaka and A’ Famosa by using partial mitochondrial D-loop gene sequences. DNA of all individuals was extracted from FTA Card. Data analyses were performed using Maximum Parsimony, MP and Neighbor Joining, NJ. Molecular phylogeny analysis revealed that all the samples likely belong to one species of Sumatran Orang Utan (P. abelii) and three different subspecies of Bornean Orang Utans (P. p. pygmaeus, P. p. morio, and P. p. wurmbii). The results obtained in this study indirectly help the management of zoos in term of conservation and visitor’s education.
  1. 1. S. Budiharta and E. Meijaard, “State of Kalimantan’s biodiversity”, in Development, Environment and the People of Kalimantan, edited by B. P. Resosudarmo, M. H. Imansyah and L. Napitupulu (Indonesian Regional Science Association (IRSA), Jakarta, 2017), pp. 1–22. Google Scholar
  2. 2. E. R. Meyfarth, “Biological Conservation: Orangutan-Rattan Relationships in Indonesian Borneo,” Master Thesis, York University, 1999. Google Scholar
  3. 3. K. S. Warren, E. J. Verschoor, S. Langenhuijzen, Heriyanto, R. A. Swan, L. Vigilant and J. L. Heeney, Mol. Biol. Evol. 18, 472–480. 2001. https://doi.org/10.1093/oxfordjournals.molbev.a003826, Google ScholarCrossref
  4. 4. Y. W. Zhang, O. A. Ryder and Y. P. Zhang, Mol Evol. 52, 516–526 (2001). https://doi.org/10.1007/s002390010182, Google ScholarCrossref
  5. 5. D. Brandon-Jones, A. A. Eudey, T. Geissmann, C. P. Groves, D. J. Melnick, J.C. Morales, M. Shekell, and C. B. Stewart, International Journal of primatology 25, 1 (2004). https://doi.org/10.1023/B:IJOP.0000014647.18720.32, Google ScholarCrossref
  6. 6. I. Singleton, S. A. Wich, S. Husson, S. Stephens, S. S, Utami Atmoko, M. Leighton, N. Rosen, K. Traylor-Hozler, R. Lacy and O. Byers, Final report orang utan population and habitat viability assessment 15-18 January 2004, Jakarta, Indonesia. Google Scholar
  7. 7. K. J. Garner and O. A. Ryder, Molecular Phylogenetics and Evolution 6, 139–48 (1996). https://doi.org/10.1006/mpev.1996.0056, Google ScholarCrossref
  8. 8. S. S. Utami, B. Goossens, M. W. Bruford, J. R. de Ruiter, V. Hoof, Behavioural Ecology 13, 643–652. Google ScholarCrossref
  9. 9. B. Goossens, L. Chikhi, M. Ancrenaz, Public Library of Science, Biology 4, 285–291 (2006b). Google Scholar
  10. 10. T. I. Borokini, International Journal of Conservation Science 4, 197–212 (2013). Google Scholar
  11. 11. S. Gustavsson, “Save the orangutan (Pongo Pygmaeus) - A comparative study of conservation work in Scandinavian zoos and Bornean rehabilitation centers,” Degree Thesis, Uppsala University, 2011. Google Scholar
  12. 12. S. Ahmad, Z. Ali, A. Nemat, S. K. Sikander, Z. Hussain and K. Saleem, The Journal of Animal & Plant Sciences 25, 509–513 (2015). Google Scholar
  13. 13. B. A. Minteer and J. P. Collins, ILAR Journal 54, 1 (2013). https://doi.org/10.1093/ilar/ilt009, Google ScholarCrossref
  14. 14. L. S. Reade and N. K. Waran, Applied Animal Behaviour Science 47, 109–118 (1996). https://doi.org/10.1016/0168-1591(95)01014-9, Google ScholarCrossref
  15. 15. A. Tribe and R. Booth, Human Dimensions of Wildlife 8, 65–74 (2003). https://doi.org/10.1080/10871200390180163, Google ScholarCrossref
  16. 16. Z. S. Klukkert, M. F. Teaford and P. S. Ungar, American Journal of Physical Anthropology 148, 276–284 (2012). https://doi.org/10.1002/ajpa.21592, Google ScholarCrossref
  17. 17. T. M. Smith, A. M. Bacon, F. Demeter, O. Kullmer, T. Kim, J. De Vos, W. Wei, J. P. Zermeno and L. Zhao, Human Origins Research 1, e1 (2011). https://doi.org/10.4081/hor.2011.3, Google ScholarCrossref
  18. 18. J. A. Vega, J. Suazo, S. V. Smalley, L. R. Cataldo, G. Cubillos and J. L. Santos, Journal of Threatened Taxa 6, 5712–5717 (2014). https://doi.org/10.11609/JoTT.o3611.5712-7, Google ScholarCrossref
  19. 19. M. F. Jalil, J. Cable, J. Sinyor, I. Lackman-Ancrenaz, M. Ancrenaz, M. W. Bruford and B. Goossens, Molecular Ecology 17, 2898–2909 (2008). https://doi.org/10.1111/j.1365-294X.2008.03793.x, Google ScholarCrossref
  20. 20. M. E. Steiper, Journal of Human Evolution 50, 509–522 (2006). https://doi.org/10.1016/j.jhevol.2005.12.005, Google ScholarCrossref
  21. 21. D. L. Swofford, PAUP*. Phylogenetic analysis using parsimony (*and othermethods). Version 4. Sunderland: Sinauer Associates (2002). Google Scholar
  22. 22. S. Kumar, G. Stecher and K. Tamura, Mol Biol Evol 33, 1870–1874 (2016). https://doi.org/10.1093/molbev/msw054, Google ScholarCrossref
  23. 23. M. Kimura, Mol Evol 16,111–120 (1980). https://doi.org/10.1007/BF01731581, Google ScholarCrossref
  24. 24. M. Ruvolo, Mol Phylogenet Evol 5, 202–219 (1996). https://doi.org/10.1006/mpev.1996.0014, Google ScholarCrossref
  25. 25. U. Arnason, A. Gulberg, and A. Janke, J. Mol. Evol. 47, 718–727 (1998). Google ScholarCrossref
  26. 26. A. Nater, P. Nietlisbach, N. Arora, V. P. van Schaik, M. A. Van Noordwijk, E. P. Willems, I. Singleton, S. A. Wich, B. Goossens, K. S. Warren, E. J. Verschoor, D. Perwitasari-Farajallah, J. Pamungkas and K. Michael, Molecular Biology Phylogeography of Orangutans, 1–40 (2011). Google Scholar
  27. 27. V. Nijman, An assessment of trade in gibbons and orang-utans in Sumatra, Indonesia (TRAFFIC, Southeast Asia, 2009). Google Scholar
  28. 28. T. L. Goldberg and M. Ruvolo, Biol. J. Linnean Soc. 61, 301–324 (1997b). https://doi.org/10.1111/j.1095-8312.1997.tb01794.x, Google ScholarCrossref
  29. 29. J. J. Ely, B. Dye, W. I. Frels, J. Fritz, P. Gagneux, H. H. Khun, W. M. Switzer and D. Rick Lee, American Journal of Primatology 67, 223–241 (2005). https://doi.org/10.1002/ajp.20179, Google ScholarCrossref
  30. 30. E. L. Pearson, R. Lowry, J. Dorrian and C. A. Litchfield, Zoo Biol. 33, 184–196 (2014). https://doi.org/10.1002/zoo.21120, Google ScholarCrossref
  31. 31. K. A. Witzenberger and A. Hochkirch, Mamal bio, 1–4 (2011). Google Scholar
  32. 32. C. Hvilsom, P. Frandsen, C. Borsting, F. Carlsen, B. Sallé, B. T. Simonsen and H. R. Siegismund, Heredity (Edinb) 110, 586–593 (2013). https://doi.org/10.1038/hdy.2013.9, Google ScholarCrossref
  33. 33. K. Standbury, “Supplementing the studbook. Using genetic analysis to complement a captive breeding programme of an endangered primate, Hylobates moloch,” Ph. D. thesis, University of Essex, 2015. Google Scholar
  34. 34. D. A. Conde, N. Flesness, F. Colchero, O. R. Jones and A. Scheuerlein, Science 331, 1390–1391 (2011). https://doi.org/10.1126/science.1200674, Google ScholarCrossref
  35. 35. N. F. R. Synder, S. R. Derrickson, S. R. Beissinger, J. W. Wiley, T. B. Smiyh, W. D. Toone and B. Miller, Conservation Biology 10, 338–348 (1996). https://doi.org/10.1046/j.1523-1739.1996.10020338.x, Google ScholarCrossref
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